Evidence stage (Yekkour et al., 2012). Various chemical fungicides

Evidence of biocontrol and plant-growth-promoting
capacities of Streptosporangium becharense strain SG1: an antagonistic
actinobacterium from the Algerian SaharaABSTRACT

Sixteen actinobacterial strains isolated from various ecological niches
in the Algerian Sahara ‘were investigated for their growth
promotion effect on durum wheat plants and for their biocontrol potential of Fusarium
culmorum root rot. All actinobacteria were characterized for in vitro
antagonistic activity and plant-growth-promotion traits, for the production
of cyanhydric acid, siderophores, chitinases and indole-3-acetic acid, and for
inorganic phosphate solubilization. Strongly antagonistic actinobacteria were selected and investigated for the biocontrol of F.
culmorum in vivo and for growth
promotion of durum wheat plants in autoclaved and non-autoclaved soils. The Streptosporangium becharense strain SG1 isolate exhibited
remarkable positive results in all trials. Compared to untreated wheat seeds,
the root rot severity index was decreased significantly (P ? 0.05) by
all seed bacterization treatments. However, the highest protective effect was
obtained by the strain SG1, which reduced the disease severity index from 77.8%
to 16%, whereas it was only
reduced to 24.2% by chemical seed treatment with Dividend®. Moreover, strain SG1 led to significant increases in the shoot length,
root length and dry weight of plants. ”This is the first study
that has showed the interesting potential of biocontrol and growth improvement
of wheat plants by S. becharense SG1, it has proved to be a
powerful approach to exploit actinobacterial communities in crop enhancement.

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KEYWORDS

Actinobacteria; Streptosporangium becharense strain SG1; Biocontrol; Fusarium culmorum; Plant-growth-promotion; Durum wheat

 

 

 

 

 

Introduction

Chemical products are commonly used as pesticides or fertilizers to
improve crop production. However, the abusive use of agrochemical compounds often causes
problems such as contamination of the soil, high toxicity on native microbial
communities, pesticide resistance and other adverse effects on the environment (Huang, Zhang, Yong, Yang, &
Shen, 2011).

Root rot and
damping-off of seedlings is a common disease caused by Fusarium species in
a variety of crop cereals, such as corn, rice, barley and wheat. In Algeria, Fusarium
culmorum is considered to be a serious problematic for the cereal crops,
which causes considerable losses especially at the seedling stage (Yekkour et al., 2012). Various chemical fungicides are frequently used to
manage the Fusarium diseases and to prevent crop losses. Nevertheless,
the majority of them are not ideally effective to eradicate these
phytopathogenic fungi (Huang et al., 2011). Du to these preoccupations, there is an increasing demand for
developing biocontrol methods
for sustainable agriculture aiming to protect the environment by reducing
chemical pesticide uses (Shimizu, 2011).

Actinobacteria are
considered as potential biocontrol agents of plant diseases. Actinobacteria can also
colonize the plant rhizosphere soil and produce adverse compounds such as cyanhydric acid, siderophores and hydrolytic
enzymes (De-Oliveira, Da Silva, & Van Der Sand, 2010; Passari et al., 2015). They can solubilize inorganic
phosphate and potash and enhance their uptake by the plant (Hamdali, Hafidi, Virolle,
& Ouhdouch, 2008). Some actinobacteria are also known to develop
symbiotic associations with crop plants, colonizing their internal tissues
without causing disease symptoms and producing plant growth regulators such as
gibberellic acid and indole-3-acetic acid (IAA) (Goudjal et al., 2013). In addition, several researchers
reported the potential of plant-associated actinobacteria as agents to manage
various soil-borne phytopathogenic fungi and/or to stimulate plant growth (Ramadan, AbdelHafez , Hassan & Saber, 2016).

In this context, we aimed to evaluate the potential
of some actinobacterial strains isolated from sandy soils or native plants that
had
successfully adapted to the harsh edaphoclimatic conditions of the Algerian
Sahara, as agents for biocontrol of F. culmorum root rot disease in vivo and for promoting the growth of
durum wheat plants.

 

Materials and methods

 

Actinobacterial isolates

 

Sixteen rhizospheric or endophytic
actinobacteria (Table 1), isolated by our research team in the Laboratory of
Biology of Microbial Systems (LBSM), ENS – Kouba, Algiers, Algeria, were
selected to investigate their efficacy in the in vivo biocontrol of Fusarium
culmorum root rot disease and in the growth promotion of wheat plants. Actinobacteria were selected based on their
efficacy in the biocontrol of soil-borne phytopathogenic fungi such as Rhizoctonia
solani (Goudjal et al., 2014) and F. oxysporum f. sp. radicis-lycopersici (Zamoum
et al., 2015; Zamoum, Goudjal, Sabaou, Mathieu & Zitouni, 2017), on their
growth promotion effect on cropped plants (Goudjal et al., 2013; 2015) and on
the fact that they were classified as novel species of actinobacteria (Chaabane
Chaouch et al., 2016a, b; Lahoum et al., 2016).

 

Antagonistic activity of endophytic actinobacteria

 

The streak method was adopted to estimate the antagonistic activities of actinobacteria
against five soil-borne phytopathogenic fungi (Fusarium culmorum (LF18),
F. graminearum (LF21), F. oxysporum f sp. radicis-lycopersici
(LF30), Rhizoctonia solani (LAG3), and Bipolaris sorokiniana
(LB12)) from the microbial collection of our laboratory. The actinobacterial
isolates were cultivated separately in straight lines on International Streptomyces
Project (ISP) 2 medium (Shirling and Gottlieb 1966) plates which are incubated for 8 days at 30ºC. After that,
target fungi were seeded in streaks perpendicular to those of actinobacteria
cultivation. After incubation at 25ºC for 5 days, the distance of inhibition
between target fungus and actinobacteria colony margins was measured (Toumatia
et al., 2015).

 

Determination of biocontrol and plant-growth-promotion
traits

 

Hydrogen cyanide (HCN) production

 

Actinobacteria were grown in Bennett agar amended with 4.4 g l?1 of
glycine for studying their ability to produce HCN. Whatman paper
soaked in 0.5% picric acid (in 2% sodium carbonate) for a minute and stuck
under the Petri dish lid. The
plates were then sealed air-tight with Para film and incubated at 30 °C for 7
days”. Positive production of HCN is
indicated by an orange color on the filter paper (Passari et al., 2015).

 

Siderophore production

 

The method described by Sadeghi et al. (2012) was used to evaluate the production of
siderophores by isolates. Six millimetre disks from actinobacteria cultures
were placed on chrome azurol S plates and incubated at 30°C for 7 days.
Apparition of orange haloes around colonies was indicative to positive
siderophore production.

 

Chitinolytic activity

 

The actinobacteria were spot inoculated on colloidal chitin agar medium
to tested chitinolytic activity (Zamoum et al., 2017). Cultures were incubated at 30°C for 5
days. Measurement of the hydrolytic halo diameter surrounding the
actinobacterial colonies allows estimating chitinolytic activity.

 

Indole-3-acetic acid production (IAA)

 

For assessment of IAA synthesis, actinobacterial
isolates were inoculated in 250 mL Erlenmeyer flasks containing 50 mL of yeast extract-tryptone (YT) broth,
supplemented with 5 mg ml?1 of L-tryptophan, and kept in an incubated shaker (200 rpm, 30
ºC, 5 days). The flasks containing the culture broth were then centrifuged at
4,000 rpm for 30 min. Equimolar concentration of Salkowski reagent (1 mL 0.5 M
FeCl3 dissolved in 50 mL 35% HClO4) was added to 2 mL of
supernatant. The mixture was incubated in the dark for 30 min and the appearance of pink colour indicated the
IAA production witch was confirmed by confirmed by thin layer chromatography (TLC)
as used by Ahmad, Ahmad & Khan, (2009). Ethyl acetate fractions (10–20 )
were spotted on TLC plates (silica gel GF254, thickness 0.25 mm, Merck,
Germany) and developed in ethyl acetate: chloroform: formic acid (55:35:10, by
vol.). Spots with Rf values identical to authentic IAA were
identified under UV light (254 nm) after spraying the plates with Ehmann’s reagent. The absorbance was measured in a
spectrophotometer at 530 nm and the IAA concentration was estimated using a pure
IAA standard graph (Goudjal et al., 2013).

 

Phosphate solubilization

 

The trials were achieved in 500 ml Erlenmeyer flasks containing 100 ml
of liquid Pikovskaya medium supplemented with 5 g l?1 of Ca3(PO4)2,
AlPO4 or FePO4 as insoluble phosphate sources. Isolates were inoculated in the flasks aseptically and
kept in an incubated shaker (200 rpm, 30 ºC, 7 days). The
liquid cultures were centrifuged at 10,000 rpm for 10 min and the supernatant cultures were collected then used to
determine the amount of dissolved phosphorus using the molybdenum blue
colorimetric method (Liu et al., 2014).

 

In vivo biocontrol of Fusarium culmorum

 

The potential of the strong antagonistic actinobacteria in the in
vivo biocontrol of F. culmorum (LF18) and their ability to
promote the growth of durum wheat (cv. vitron) seedlings were tested in an
infested soil sampled cereal field in the Algerian Sahara (33°62’N, 2°91’E).
Trials were performed both in autoclaved and non-autoclaved soils.

Surface-sterilization of seeds was performed by sequential dipping in ethanol solution (70% v/v; 3
min), NaClO solution (0.9% w/v; 4 min) followed by washing three times in
sterile distilled water. After that, surface-sterilized seeds were
separately bacterized by dipping in the suspensions of antagonistic
actinobacteria strains (? 106 CFU ml?1) for 30 min and were dried under a laminar flow hood before being sown
the same day. Actinobacteria spores on the bacterized seeds were enumerated by
the plate dilution method on ISP2 medium. They yielded ? 4 × 106 CFU g?1 bacterized seeds.

Autoclaved and non-autoclaved soils were infested with the F. culmorum spore suspension
(? 103 CFU
ml?1). For this,
plastic pots (10 cm in diameter ×12 cm high) filled with soil were irrigated with 100 ml of the F. culmorum spore suspension. The density of F.
culmorum in the infested soil was evaluated at ? 1.11 × 104 CFU g?1.

Four treatments were conducted in the
biocontrol assay: (1) untreated seeds were sown in non-infested pots (negative
control); (2) untreated seeds were sown in infested soils to highlight the
virulence of F. culmorum (LF18) (positive control); (3) bacterized seeds
sown in pots with infested soil to evaluate the biocontrol potential of each
antagonistic actinobacteria strain; (4) surface-sterilized seeds were treated with a
marketed chemical fungicide Dividend® 030 FS
(Difenoconazole)by dipping for 3 min in the fungicide solution and drying for 2h under a laminar flow
hood, before being cultivated in infested soils.

Five seeds were sown per pot with 10
replicates for each treatment. In vivo biocontrol trials were conducted twice to ensure
reproducibility. Pots were then placed in a fully randomized
complete block design in a greenhouse (24?28°C, 14 h light/10 h dark). Cultures were watered daily with tap water
(10 ml per pot) for 6 weeks.

As used by Dhanasekaran et al. (2005), the F. culmorum root
rot symptoms were evaluated using the following scale:0 = no symptom, 1 = 0?25% of root browning, 2 = 26?50% of root browning, 3 = 51?75% of root browning, 4 = 76?100% of root browning and 5 = plant death. For each seed treatment, the disease severity index (DSI) was
calculated using the following formula:

R = the disease rating, N = number of plants with this rating, H =
highest rating category, T = total number of counted plants.

The effect of each seed treatment on the growth of
wheat plants was also evaluated by measuring the shoot and root lengths, and
the dry weight of healthy plants.

 

Statistical analysis

 

Three replications were performed for each experiment (10 replicates for
in vivo trials) and values represent the mean ± standard deviation. Data were subjected to one-way
analysis of variance (ANOVA). When the F-statistic was significant, Tukey’s
post hoc test (P = 0.05) was used to separate means.

 

Results

 

Antagonistic activities

 

Of the 16 actinobacterial isolates, seven
(43.8%) showed positive antagonistic activities against all the fungi. Ten
isolates (62.5%) revealed antagonistic activity against at least three of the
five soil-borne phytopathogenic fungi tested (Table 1), with the most striking
antagonistic activity against Fusarium oxysporum f. sp. radicis-lycopersici
and Rhizoctonia solani. However, mycelial growth of F. culmorum was inhibited by only 25% of the isolates. It was noted that strong antagonistic activities
(inhibition zone >20 mm) were shown in four isolates and the largest zone of inhibition
was obtained by Streptosporangium becharense SG1.

 

Hydrogen cyanide, siderophore production
and chitinolytic activity

 

The results of HCN and siderophore
production, and chitinolytic activity by the four selected antagonistic
actinobacteria (strains CAR2, SG1, ZLT2 and MB29) are given in Table 2. All
isolates can produce HCN. Siderophores were produced by three isolates. All
targeted actinobacteria showed positive results for chitinolytic activity.

Indole-3-acetic acid production and
phosphate solubilization ability

 

Three of the four isolates tested produced IAA in YT broth, with the
isolate S. becharense SG1 showing the best production (Table 2). Our results demonstrated that all four
actinobacteria tested dissolved phosphorus from tricalcium phosphate and aluminium phosphate sources (Table 2), and only the isolate Saccharothrix
longispora MB29 was incapable of dissolving iron phosphate.

 

In vivo biocontrol of Fusarium culmorum

 

Untreated seeds sown in infested soils
(positive control) showed the highest disease severity indexes (DSI) of F.
culmorum root rot in wheat seedlings, both in autoclaved and
non-autoclaved soils (Figure
1(A), Figure 2(B),(C)). This proves the virulence of the pathogen and the
high sensitivity of durum wheat cv. vitron.

Coating
wheat seeds with spores of antagonistic actinobacteria and chemical treatment
with Dividend® significantly (P < 0.05) decreased the disease incidence, which was more noticeable in non-autoclaved soil than in autoclaved soil (Figure 1(A)). Compared to the positive control and with reference to their antagonistic activities, the four actinobacteria selected showed biocontrol effects on F. culmorum root rot in vivo. Bacterization of wheat seeds significantly (P < 0.05) reduced the disease severity index. Compared to untreated wheat seeds in non-infected soils (negative control), the isolate S. becharense SG1 achieved the highest effect in promoting growth of wheat seedlings. It significantly (P < 0.05) increased the shoot length from 15.88 cm to 21.58 cm (Figure 1(B)), root length from 7.11 cm to 12.62 cm (Figure 1(C)) and dry weight from 0.26 g to 0.7 g (Figure 1(D)).   Discussion   Several studies have already reported that the antagonist Streptomyces species can be considered as active against numerous phytopathogenic fungi, such as F. culmorum, F. oxysporum f. sp. radicis-lycopersici, R. solani, and Bipolaris sorokiniana (Yekkour et al., 2012; Goudjal et al., 2014; Zamoum et al., 2015), and have been suggested for use as biocontrol agents, or involved in the in vivo biocontrol of the wheat root rot caused by F. culmorum (Toumatia et al., 2015). The study by El-Tarabily, Hardy, Sivasithamparam, Hussein & Kurtboöke (1997) was the first to provide evidence of S. albidum in the biocontrol of Pythium coloratum. They reported that the mechanism involved in disease reduction appeared to be antibiosis by production of non-volatile antifungal compounds. Antifungal compounds from actinobacteria may facilitate the biocontrol of plant diseases but this does not mean that it is the only mechanism by which biocontrol occurs (El-Tarabily et al. 1997; Franco-Correa et al. 2010). Our results showed that all isolates can produce HCN. This volatile antifungal compound can inhibit growth of F. culmorum and reduce root rot disease as noted by Aydi-Benabdallah, Jabnoun-Khireddine, Nefzi, Mokni-Tlili, & Daami-Remadi (2016). Our findings showed that S. becharense SG1 isolated from Saharan soil (Chaabane Chaouch et al., 2016b) produced HCN and significantly reduced the F. culmorum root rot of durum wheat (Fig. 1A). Furthermore, Defago et al. (1990) suggested that HCN production worked by inducing resistance in host plants. Nevertheless, results by El-Tarabily et al. (1997) showed that Streptosporangium albidum failed to produce volatile antifungal compounds. However, to the best of our knowledge, this is the first report showing HCN production by a Streptosporangium species. Siderophores were produced by three isolates (Table 2). These low molecular weight compounds can solubilize and sequester iron from the soil (Sadeghi et al., 2012).Siderophores are secreted by many actinobacterial genera, such as Streptomyces (Zamoum et al., 2015), and permit the acquisition of ferric ion, thus inhibiting phytopathogen growth by competition for iron (Ramadan et al., 2016). The possible association of siderophore production with the biocontrol ability of actinobacteria has been reported by Cao, Qiu, You, Tan & Zhou (2005). Our findings showing siderophore production by S. becharense SG1 are consistent with those of Sudisha et al. (2016), who reported siderophore production by Streptosporangium roseum SJ_UOM?18?09. All isolates showed positive results for chitinolytic activity, which can be involved in the cell wall degradation of several phytopathogenic fungi. However, many authors have reported the potential of actinobacteria producing chitinase for the biocontrol of F. oxysporum f. sp. radicis-lycopersici, F. oxysporum f. sp. lini, F. culmorum and Botrytis cinerea in situ (Goudjal, Zamoum, Sabaou, Mathieu & Zitouni, 2016; Das, Kumar, Kumar, Solanki, Kapur, 2017). Recording to our results, the isolate S. becharense SG1 show the best production of IAA. This phytohormone improves the growth of plants by increasing seed dry weight, seedling elongation, and germination rate (Goudjal et al., 2014). Several actinobacterial species have already been reported to produce IAA but this is the first report highlighting IAA production by a species from the genus Streptosporangium. Another mechanism by which actinobacteria play an important role in the improvement of plant growth is the solubilization of inorganic phosphate as reported by Hamdali et al. (2008). The overall growth of plants is affected by the availability of essential plant nutrients such as phosphorus (P) (Hamdali et al., 2008). Several bacterial, fungal and actinobacteria strains have been revealed to be phosphate solubilizing organisms (Khan, Almas & Ees, 2014). They convert insoluble forms of phosphate, such as tricalcium phosphate (Ca3(PO4)2), aluminium phosphate (AlPO4) and iron phosphate (FePO4), to soluble phosphorus forms (Khan et al., 2014). The isolate S. becharense SG1 obtained the highest amount of dissolved phosphorus from tricalcium phosphate. These Franco-Correa et al. (2010) demonstrated high activities of actinobacteria in the solubilization of tricalcium phosphate. Furthermore, Mba (1997) reported similar results for the solubilization of inorganic phosphate by Streptosporangium species. According to our results, surface treatment of seeds with the control chemical agent showed a marked protective effect against F. culmorum root rot. Toumatia et al. (2015) obtained similar results, indicating that chemical treatment of wheat seeds with Tebuconazole is effective in controlling F. culmorum disease. However, the massive use of these chemical pesticides can lead to environmental pollution, which is a major worry in agricultural production (Shimizu, 2011). The strongest biocontrol potential in vivo was obtained by S. becharense SG1 (Figure 2(A)). This suggests that antibiosis is a factor that can be involved in biocontrol in situ, and that the production of HCN, siderophores and chitinases may also be effective mechanisms for controlling F. culmorum root rot (Franco-Correa et al., 2010). Additionally, biocontrol of root rot in vivo may be affected by many factors besides nutrient availability, water status, soil morphology, soil temperature, pH value, and interactions with indigenous soil microbes (Dhanasekaran et al., 2005). Our findings show that the biocontrol effect of F. culmorum is more marked in non-autoclaved soil, which suggests the presence of a synergic effect between the antagonistic actinobacteria and soil indigenous microflora. Similar results have been reported by Errakhi, Bouteau, Lebrihi & Barakate (2007), who highlighted the effect of soil microflora in controlling Fusarium root rot of sugar beet. Biocontrol of plant diseases is often associated with promotion of plant growth (Shimizu, 2011). The isolate S. becharense SG1 presented the highest effect in promoting growth of wheat seedlings. It increased the shoot length, root length and dry weight. Our results are consistent with those of Zamoum et al. (2015), who reported that several actinobacteria may have a suppressive effect of Fusarium root rot disease.  Furthermore, the efficacy of Streptosporangium species in the biocontrol of'' Pythium coloratum and Sclerospora graminicola has been reported by El-Tarabily et al. (1997) and Sudisha et al. (2016). However, as far as we know, this is the first work reporting the efficacy of S. becharense SG1 in the biocontrol of F. culmorum root rot disease. S. becharense is a new species of Streptosporangium discovered very recently by Chaabane Chaouch et al. at our laboratory (2016b) and no study of its efficacy in biocontrol has yet been carried out. The strain SG1 showed the best results for all attributes determined in our study. Thus, it showed the greatest effect in the biocontrol of F. culmorum in vivo and the highest plant-growth-promoting activities on durum wheat (cv. vitron).This is the first report highlighting such properties for the rhizospheric actinobacterium S. becharense SG1, it has proved to be a powerful approach to exploit actinobacterial communities in crop enhancement.   Acknowledgements We thank Susan Becker, translator and native English speaker, for her kind contribution in revising the English of this article.   Disclosure statement No potential conflict of interest was reported by the authors.